Release 7.0 Updated (September 15 2009)
Based on UCSC hg18, mm9
We recommend to use the Internet Explorer 6.0 or later for visiting our database.

About this Database

DBTSS: Database of Transcriptional Start Sites

Current version is based on UCSC hg18, mm9


ABSTRACT About this Database
DBTSS is a database which contains precise positional information for transcription start sites (TSSs) of eukaryotic mRNAs. In this update, we included additional 328 million TSS tag data, which were generated by massively sequencing analysis of the full-length cDNAs in humans and mice. The TSS tags were collected from a total of 33 different cell types or cultured conditions. Also, differential usages of the TSSs depending on the cellular circumstances are made retrievable and viewable by a series of newly implemented interfaces. The retrieved promoter information is further linked to the comparative genomics viewer to study evolutional turnover of the TSSs. By accommodating unprecedented amount of TSS data, the updated DBTSS represents, for the first time, the dynamically changing nature of the TSSs of mammalian genes, depending on cellular circumstances and in the course of evolution,
Table of Contents About this Database
1.cDNA Library
1-1. Construction of a Full-Length cDNA Library

1-2. Significance of Full-length cDNA data

1-3. Current Status

1-4. Experimental Procedures

1-5. Database Production

2.TSS Seq
2-1. Experimental Procedures

2-2. Current Status

2_3. Accession Number
References About this Database
Tsuchihara K, Suzuki Y, Wakaguri H, Irie T, Tanimoto K, Hahimoto S, Matsushima K, Mizushima-Sugano J, Yamashita R, Nakai K, Bentley D, Esumi H and Sugano S.(2009)
Massive transcriptoional start site analysis of human genes in hypoxia cells. Nucleic Acids Res. 2009 Feb 22.


Wakaguri H, Yamashita R, Suzuki Y, Sugano S, Nakai K.(2008)
DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res. 2007 Oct 16;(Database issue)


Tsuritani K, Irie T, Yamashita R, Sakakibara Y, Wakaguri H, Kanai A, Mizushima-Sugano J, Sugano S, Nakai K, Suzuki Y.(2007)
Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. Genome Res. 2007 Jul;17(7):1005-14. Epub 2007 Jun 13.


Ota T, Suzuki Y et al.(2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet. 2004 Jan;36(1):40-5. Epub 2003 Dec 21.


Suzuki Y, Sugano S.(2003)
Construction of a full-length enriched and a 5'-end enriched cDNA library using the oligo-capping method. Methods Mol Biol. 2003;221:73-91.


Japanese Reference About this Database
"Database Manual" (Youdosha)